General Concepts

This section covers topics that are generally applicable across various parts of the library.

Contents:

• Highdicom and Pydicom
  • Pydicom
  • Highdicom
• Images
  • Reading Images
  • Accessing Frames
  • Accessing Total Pixel Matrices
  • Accessing Volumes
  • Lazy Frame Retrieval
• Pixel Transforms
  • Pixel Transforms in Highdicom
  • Real World Value Map
  • Modality Transform
  • Value of Interest (VOI) Transform
  • Presentation LUT
  • Palette Color LUT
  • ICC Profile
• Volumes
  • Creating a Basic Volume
  • Affine Matrices
  • Volume Geometries
  • Volumes From Images
  • Volumes From Image Series
  • Array Manipulation
  • Indexing
  • Spatial Operations
  • Patient Orientation
  • Channels
  • Full Example
  • Volumes To/From NIfTI Files
  • Volumes To/From ITK Images
• Coding
  • Codes within Pydicom
  • Finding Suitable Codes
• Reading from Remote Filesystems
  • Google Cloud Storage (GCS)
  • Amazon Web Services S3